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Pumpkin Cream Cheese Muffins Recipe

I absolutely love this Pumpkin Cream Cheese Muffins Recipe because it combines the cozy flavors of pumpkin spice with a luscious cream cheese swirl that’s simply irresistible. When I first tried these muffins, I was amazed at how moist and flavorful they turned out, making them perfect for autumn mornings or an anytime snack with your afternoon coffee.

You’ll find that this recipe strikes a great balance between spice and sweetness, plus the cream cheese adds that creamy texture that makes each bite feel indulgent but still wholesome. Whether you’re baking for a holiday crowd or just treating yourself, these muffins are definitely worth trying.

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Why You’ll Love This Recipe

  • Perfect Moisture: The pumpkin and cream cheese keep these muffins wonderfully soft and moist.
  • Easy to Make: Simple ingredients and straightforward steps mean you can whip these up anytime.
  • Flavor Balance: The pumpkin pie spices give just the right touch of warmth without being overpowering.
  • Versatile Recipe: Great for breakfast, dessert, or a snack, and easy to customize.

Ingredients You’ll Need

Each ingredient in this Pumpkin Cream Cheese Muffins Recipe is chosen to create a tender muffin with that perfect balance of spice and sweetness. Use fresh spices and good quality canned pumpkin for best results.

  • White whole wheat flour: Adds nuttiness and a bit more fiber than regular white flour, but still light.
  • Unbleached all-purpose flour: Gives structure without weighing muffins down.
  • Raw sugar: Brings a subtle molasses flavor and slight crunch to the muffin top.
  • Baking soda: Helps the muffins rise nicely with that tender crumb.
  • Pumpkin pie spice: The star seasoning that brings classic autumn vibes.
  • Nutmeg & cinnamon: Complement the pumpkin pie spice perfectly and brighten the flavor.
  • Salt: Balances sweetness and enhances all the spices.
  • Canned pumpkin: Use plain pumpkin puree, not pumpkin pie filling for the right texture and flavor.
  • Coconut oil: Adds moisture and a hint of richness; you can swap with any neutral oil.
  • Egg: Binds ingredients and helps with lift.
  • Vanilla extract: Adds warmth and depth to the flavor.
  • Cream cheese: The luscious filling that makes these muffins stand out.
  • Additional raw sugar, egg yolk, and vanilla extract: Mixed into the cream cheese for a smooth, dreamy swirl.
  • Baking spray: Use this to easily release muffins from the liners without sticking.
Note: You’ll find the complete list of ingredients, along with their exact measurements, in the printable recipe card at the bottom of this post.

Variations

I love to switch things up with this Pumpkin Cream Cheese Muffins Recipe depending on the season or what I have on hand. Making it your own is part of the fun, and I encourage you to try some of these tweaks!

  • Add nuts: My family tends to adore chopped walnuts or pecans stirred into the batter for extra crunch and a nutty layer of flavor.
  • Gluten-free option: Although I haven’t personally tested this, you can try a 1:1 gluten-free baking flour blend like Cup4Cup. If you give it a go, let me know how it turns out!
  • Spice swap: Out of pumpkin pie spice? Use extra cinnamon and nutmeg with a pinch of ginger, cloves, and allspice to mimic the flavor.
  • Mini muffins: Perfect for parties or a quick snack – just bake the batter in mini muffin tins for about 20 minutes.
  • Quick bread: Pour the batter into a loaf pan for a pumpkin bread – it bakes longer, around 50 minutes, but is just as delicious.

How to Make Pumpkin Cream Cheese Muffins Recipe

Step 1: Prep Your Muffin Tin and Oven

Start by preheating your oven to 350°F. Line a 12-cup muffin tin with paper liners and spray them lightly with baking spray. This helps the muffins pop out cleanly later, which I’ve learned saves you from a messy muffin hunt!

Step 2: Mix the Dry Ingredients

In a medium bowl, whisk together the white whole wheat flour, all-purpose flour, raw sugar, baking soda, pumpkin pie spice, nutmeg, cinnamon, and salt until well combined. Whisking helps evenly distribute the spices and leavening, which makes all the difference.

Step 3: Combine Wet Ingredients

In a larger bowl, blend the canned pumpkin, coconut oil, whole egg, and vanilla extract using a mixer on medium speed until the mixture thickens a bit. Be sure to scrape down the sides so everything is incorporated evenly.

Step 4: Combine Wet and Dry Mixtures

Gradually add the flour mixture to your wet pumpkin mixture, mixing on low speed just until combined. Avoid overmixing here—overworked batter can make muffins dense instead of tender and fluffy.

Step 5: Prepare the Cream Cheese Swirl

In a separate bowl, beat the cream cheese until smooth. Then gradually add raw sugar, egg yolk, and vanilla extract, beating just until combined. This creamy swirl is the star that makes these muffins extra special.

Step 6: Assemble the Muffins

Divide the pumpkin batter evenly into the muffin cups. Drop about a tablespoon of the cream cheese mixture onto each muffin. Gently swirl the cream cheese into the batter using a toothpick, starting from the edge toward the center—don’t overdo the swirl or you won’t get the pretty marbled effect.

Step 7: Bake and Cool

Place the muffin tin on the center rack of your oven and bake for 24 to 26 minutes, or until a toothpick inserted in the middle comes out clean. Let the muffins cool in the pan for a few minutes, then transfer them to a wire rack to cool completely—this prevents the bottoms from getting soggy.

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Pro Tips for Making Pumpkin Cream Cheese Muffins Recipe

  • Use Room Temperature Ingredients: I always bring eggs and cream cheese to room temperature before mixing to get a smoother batter and swirl.
  • Don’t Overmix the Batter: This keeps your muffins soft and prevents them from becoming tough or rubbery.
  • Perfect Swirl Technique: Use a toothpick or skewer for delicate swirls, and stop when you get a nice marbled look, not a full blend.
  • Test for Doneness Early: Start checking your muffins a couple minutes before the timer ends to avoid overbaking.

How to Serve Pumpkin Cream Cheese Muffins Recipe

A close-up view of a muffin with a rough, uneven surface showing swirls of light beige and dark brown layers mixed through the top. The muffin sits in a crinkled, light beige paper liner that stretches outward in soft folds, placed on a white marbled surface. Other similar muffins are partially visible around the main one, all in matching paper liners. The light reflects softly off the swirled texture of the muffin, highlighting its moist and uneven top. photo taken with an iphone --ar 4:5 --v 7

Garnishes

I love keeping it simple by serving these muffins as they are — the cream cheese swirl is like a built-in topping. But if you want to dress them up, a light dusting of powdered sugar or a tiny smear of softened butter works beautifully for extra indulgence.

Side Dishes

Pair these muffins with a hot cup of chai tea or spiced latte for a fall-inspired treat. They’re also great alongside scrambled eggs or a bowl of fresh fruit if you’re enjoying them for breakfast.

Creative Ways to Present

For a festive brunch, arrange the muffins on a beautiful platter with mini jars of pumpkin butter, clotted cream, or honey nearby for guests to add as they like. I’ve also tried wrapping each muffin in parchment paper tied with twine for gifting — it’s a simple touch that makes them feel extra special.

Make Ahead and Storage

Storing Leftovers

Leftover Pumpkin Cream Cheese Muffins store beautifully in an airtight container at room temperature for up to 3 days. I recommend keeping them away from direct heat or sunlight to maintain their moist texture.

Freezing

If you want to make these ahead of time, they freeze wonderfully. Just wrap each muffin tightly in plastic wrap, then place them in a freezer-safe bag or container. They’ll stay fresh for up to 3 months in the freezer, making it easy to enjoy pumpkin goodness any time.

Reheating

When you’re ready to enjoy a frozen muffin, I like to thaw it at room temperature for 30 minutes, then warm it in the microwave for about 15 seconds. This really refreshes the texture and brings back that fresh-baked feeling.

FAQs

  1. Can I substitute the coconut oil with another oil?

    Absolutely! You can replace coconut oil with vegetable oil, canola oil, or melted butter. Just keep the amount the same to maintain the right texture and moisture level in the muffins.

  2. Is canned pumpkin the same as pumpkin pie filling?

    No, canned pumpkin pie filling has added spices and sugar, which will alter the flavor and texture of your muffins. Make sure to use pure canned pumpkin puree without any additives for the best results.

  3. Can I make this recipe dairy-free?

    You can try using dairy-free cream cheese alternatives and swap coconut oil for another dairy-free fat like avocado oil. Keep in mind the texture and flavor may vary slightly, but it’s worth experimenting if you need a dairy-free version.

  4. What if I don’t have pumpkin pie spice?

    No worries! Simply mix cinnamon, nutmeg, ginger, cloves, and allspice in equal parts to mimic the pumpkin pie spice. Adjust to your taste so it’s warm and complementary.

  5. How do I store leftover muffins for best freshness?

    Store muffins in an airtight container at room temperature for up to 3 days. For longer storage, freeze them individually wrapped to lock in moisture and flavor.

Final Thoughts

This Pumpkin Cream Cheese Muffins Recipe has quickly become one of my go-to fall treats because it’s just as simple as it is delicious. Every time I serve them, I get the same “wow” response from family and friends, and it fills the kitchen with those wonderful pumpkin spice aromas. I can’t recommend it enough if you want a cozy, comforting muffin that’s easy to make and delightful to eat — I’m sure you’ll love how they turn out!

Print
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Pumpkin Cream Cheese Muffins Recipe

5 Stars 4 Stars 3 Stars 2 Stars 1 Star 4.5 from 83 reviews
  • Author: Lauren
  • Prep Time: 15 minutes
  • Cook Time: 25 minutes
  • Total Time: 40 minutes
  • Yield: 12 muffins
  • Category: Baking
  • Method: Baking
  • Cuisine: American
  • Diet: Vegetarian

Description

Delight in these moist and flavorful Pumpkin Cream Cheese Muffins, perfectly spiced with pumpkin pie spice, nutmeg, and cinnamon. Featuring a creamy swirl of slightly sweetened cream cheese on top, these muffins are the ideal fall treat. Made with a blend of white whole wheat and all-purpose flours, and lightly sweetened with raw sugar, they offer a comforting balance of pumpkin richness and spice in every bite.


Ingredients

Dried Ingredients

  • 1/2 cup white whole wheat flour (King Arthur)
  • 3/4 cup unbleached all-purpose flour (King Arthur)
  • 3/4 cup raw sugar
  • 1 teaspoon baking soda
  • 2 teaspoons pumpkin pie spice
  • 1/4 teaspoon nutmeg
  • 1/4 teaspoon cinnamon
  • 1/4 teaspoon salt

Wet Ingredients

  • 1 1/2 cups canned pumpkin (not pumpkin pie filling)
  • 2 tbsp coconut oil
  • 1 large egg
  • 1 1/2 tsp vanilla extract

Cream Cheese Swirl

  • 5 oz 1/3 less fat cream cheese
  • 2 tablespoons raw sugar
  • 1 large egg yolk
  • 1 teaspoon vanilla extract

Other

  • Baking spray


Instructions

  1. Preheat and Prepare: Preheat your oven to 350°F (175°C). Line a muffin tin with paper liners and lightly spray the liners with baking spray to ensure easy muffin removal after baking.
  2. Mix Dry Ingredients: In a medium bowl, whisk together the white whole wheat flour, all-purpose flour, raw sugar, baking soda, pumpkin pie spice, nutmeg, cinnamon, and salt until well combined. Set aside.
  3. Combine Wet Ingredients: In a large mixing bowl, combine the canned pumpkin, coconut oil, egg, and vanilla extract. Beat at medium speed until the mixture is thick and smooth. Scrape down the sides of the bowl to incorporate all ingredients evenly.
  4. Incorporate Dry into Wet: Gradually add the flour mixture to the wet ingredients. Blend at low speed just until combined; be careful not to overmix to keep the muffins tender.
  5. Prepare Cream Cheese Swirl: In another large bowl, beat the cream cheese until smooth and creamy. Slowly add the raw sugar, egg yolk, and vanilla extract, beating until the mixture is well combined and smooth.
  6. Assemble Muffins: Pour the pumpkin batter evenly into the prepared muffin tin. Drop approximately 1 tablespoon of the cream cheese mixture onto the top of each muffin. Using a toothpick, gently swirl the cream cheese from the edges towards the center, creating a marbled effect.
  7. Bake: Place the muffin tin on the center rack of the oven and bake for 24 to 26 minutes. Test doneness by inserting a toothpick into the center of a muffin; it should come out clean or with just a few moist crumbs.
  8. Cool and Serve: Allow the muffins to cool in the tin for a few minutes before transferring them to a wire rack to cool completely. Serve once cooled for the best texture and flavor.

Notes

  • Sugar: You can substitute raw sugar with granulated or brown sugar depending on your preference or availability.
  • Flour: Feel free to use all white whole wheat flour or all-purpose flour if you don’t have both on hand.
  • Gluten-Free Option: For gluten-free muffins, replace the flours with a gluten-free blend like Cup4Cup; results may vary.
  • Spices: If pumpkin pie spice is unavailable, use a mix of cinnamon, nutmeg, ginger, cloves, and allspice for similar flavor.
  • Optional Add-ins: Adding chopped walnuts or pecans can provide a delightful crunch.
  • Oil Options: Coconut oil can be substituted with any neutral oil you prefer.
  • To Make Pumpkin Bread: Pour batter into a loaf pan and bake for about 50 minutes, checking for doneness with a toothpick.
  • Mini Muffins: Use a mini muffin tin, top with one teaspoon of cream cheese, and bake at 350°F for about 20 minutes, checking for doneness regularly.

Nutrition

  • Serving Size: 1 muffin
  • Calories: 170 kcal
  • Sugar: 16 g
  • Sodium: 160 mg
  • Fat: 6 g
  • Saturated Fat: 4 g
  • Unsaturated Fat: 2 g
  • Trans Fat: 0 g
  • Carbohydrates: 25 g
  • Fiber: 2 g
  • Protein: 3.5 g
  • Cholesterol: 34 mg

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